Description Usage Arguments Value Author(s)
This function selects the best representative PacBio alignements from multiple chunks in order to get the best estimates of theta values using Kmeans.
1 2 | getRepresentativeAlignments(inputfolder = NULL, numAlignments = 30000,
quantileSSreads = c(0.2, 0.8), minSSlibs = c(20, 25))
|
inputfolder |
A folder name where minimap files are stored. |
numAlignments |
A required number of representative PacBio alignments. |
quantileSSreads |
A quantile range for number of SSreads mapped to PB read. (default: 0.4-0.9) |
minSSlibs |
A range for the minimal and maximal number of StrandS libs being represented per PB read. |
A data.frame
.
David Porubsky
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