hardClustAccuracy: Computes the performance of the hard clustering algorithm

In daewoooo/SaaRclust: R Package to cluster long sequencing reads into chromosomes to facilitate de novo genome assembly.

Description

This function takes hard clustering results and check the accuracy against know genomic locations of PacBio reads

Usage

hardClustAccuracy(hard.clust, pb.chr, pb.flag, tab.filt, female = TRUE)

Arguments

hard.clust	An integer vecotr of cluster assignements of each PacBio read.
pb.chr	The true chromosomes of PacBio reads.
pb.flag	The true directionality of PacBio reads.
tab.filt	A data.frame obejct containing selected the best PacBio alignments.
female	Set to TRUE if analyzed data are coming from female individual.

Author(s)

Maryam Ghareghani, David Porubsky

daewoooo/SaaRclust documentation built on May 28, 2019, 7:50 p.m.