hardClustAccuracy: Computes the performance of the hard clustering algorithm

Description Usage Arguments Author(s)

View source: R/helperFuctions.R

Description

This function takes hard clustering results and check the accuracy against know genomic locations of PacBio reads

Usage

1
hardClustAccuracy(hard.clust, pb.chr, pb.flag, tab.filt, female = TRUE)

Arguments

hard.clust

An integer vecotr of cluster assignements of each PacBio read.

pb.chr

The true chromosomes of PacBio reads.

pb.flag

The true directionality of PacBio reads.

tab.filt

A data.frame obejct containing selected the best PacBio alignments.

female

Set to TRUE if analyzed data are coming from female individual.

Author(s)

Maryam Ghareghani, David Porubsky


daewoooo/SaaRclust documentation built on May 28, 2019, 7:50 p.m.