counts2ranges: Report W & C counts and cluster ID as 'GRanges-class' object.

In daewoooo/SaaRclust: R Package to cluster long sequencing reads into chromosomes to facilitate de novo genome assembly.

Description

This function takes W and C counts togther cluster probabilties and reports user defined number of cluster IDs for each genomic region and every single cell as a GRangesList-class object.

Usage

counts2ranges(counts.l = NULL, saarclust.obj = NULL, best.prob = 1,
  prob.th = 0.5)

Arguments

counts.l	A list of plus and minus alignments per genomic region.
saarclust.obj	A path to the minimap file to load.
best.prob	Set number of highest probability clusters reported per genomic region.
prob.th	Only regions with this probability and higher will be reported.

Value

A GRangesList-class object with reported cluster ID per genomic region.

Author(s)

David Porubsky

daewoooo/SaaRclust documentation built on May 28, 2019, 7:50 p.m.