getTssEnrichment-DsATAC-method: getTssEnrichment-methods

In demuellae/ChrAccR: Analyzing chromatin accessibility data in R

Description

Get TSS enrichment data and plot

Usage

## S4 method for signature 'DsATAC'
getTssEnrichment(
  .object,
  sampleId,
  tssGr = NULL,
  flank = 2000L,
  normTailW = 100L,
  smoothW = 25L
)

Arguments

.object	DsATAC object
sampleId	sample to be plotted
tssGr	GRanges object containing TSS coordinates or NULL to get default set from annotation package
flank	number of bases flanking each TSS that will be added on each side
normTailW	number of bases on each side whose counts will be used to normalize the data
smoothW	radius of the window (in bp) that will be used to smooth the data, i.e. the total width of the smoothing window will be twice that number

Value

a list containing TSS enrichment data and a ggplot object containing TSS enrichment plot

Author(s)

Fabian Mueller

demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.