Description Usage Arguments Value Author(s)
Get TSS enrichment data and plot
1 2 3 4 5 6 7 8 9 10 | ## S4 method for signature 'DsATAC'
getTssEnrichmentBatch(
.object,
tssGr = NULL,
sampleIds = getSamples(.object),
tssW = 201L,
flank = 2000L,
normTailW = 200L,
smoothW = 51L
)
|
.object |
|
tssGr |
|
sampleIds |
sampleIds for which TSS enrichment should be computed |
tssW |
size of the core TSS window |
flank |
number of bases flanking each TSS that will be added on each side |
normTailW |
number of bases on each side whose counts will be used to normalize the data |
smoothW |
diameter of the window (in bp) that will be used to smooth the data |
a list containing TSS enrichment data
Fabian Mueller
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