regionSetCounts-DsATAC-method: regionSetCounts-methods
In demuellae/ChrAccR: Analyzing chromatin accessibility data in R
Description
Usage
Arguments
Value
Author(s)
Description
Overlap the insertion data with a list of region sets
Usage
1
2
## S4 method for signature 'DsATAC'
regionSetCounts(.object, rsl, bySample = FALSE)
Arguments
.object
DsATAC object
rsl
GRangesList or NAMED list of GRanges objects. Each element corresponds to a region set for which the summary statistics are reported
bySample
for internal use: iterate over samples (instead of retrieving one giant insertion list for all samples) in order to save memory (at the tradeoff of compute time)
Value
a matrix of overlap counts for each region set and sample
Author(s)
Fabian Mueller
demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Overlap the insertion data with a list of region sets
Usage
1 2 | ## S4 method for signature 'DsATAC'
regionSetCounts(.object, rsl, bySample = FALSE)
|
Arguments
.object |
|
rsl |
|
bySample |
for internal use: iterate over samples (instead of retrieving one giant insertion list for all samples) in order to save memory (at the tradeoff of compute time) |
Value
a matrix of overlap counts for each region set and sample
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.