bed2GRanges: bed2GRanges
In demuellae/muRtools: Mueller's R tools
View source: R/epigeneticsData.R
bed2GRanges R Documentation
bed2GRanges
Description
loads a bed file and converts it to a GRanges object. Note that bed files are 0-based, right-exclusive by definition
The output of this function will be 1-based, right inclusive as defined by GRanges.
Usage
bed2GRanges(fname, assembly = NA)
Arguments
assembly
genome assembly
id
region set id
Value
a GRanges object containing the region set
Examples
reg.fname <- system.file(file.path("extdata","deep_chip_ctrl_regions.hg19.bed"), package = "muRtools")
regs <- bed2GRanges(reg.fname)
demuellae/muRtools documentation built on Nov. 6, 2024, 9:44 a.m.
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View source: R/epigeneticsData.R
| bed2GRanges | R Documentation |
bed2GRanges
Description
loads a bed file and converts it to a GRanges object. Note that bed files are 0-based, right-exclusive by definition The output of this function will be 1-based, right inclusive as defined by GRanges.
Usage
bed2GRanges(fname, assembly = NA)
Arguments
assembly |
genome assembly |
id |
region set id |
Value
a GRanges object containing the region set
Examples
reg.fname <- system.file(file.path("extdata","deep_chip_ctrl_regions.hg19.bed"), package = "muRtools")
regs <- bed2GRanges(reg.fname)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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