getGeneAnnotMap: getGeneAnnotMap

In demuellae/muRtools: Mueller's R tools

getGeneAnnotMap

Description

Get a mapping (e.g. of identifiers) and automatically select the correct AnnotationDbi database for a given assembly

Usage

getGeneAnnotMap(assembly, from = "ENSEMBL", to = "SYMBOL", multiMap = "paste")

Arguments

assembly	character string specifying the assembly
from	the column name that will be used as the key for the resulting map
to	the column name that will be used as the result for the resulting map
multiMap	character string specifying what to do if multiple mappings are found for a key by default (multiMap="paste") the results will be pasted into a single character string (separated by ';'). Other options include 'first' for just returning the first value or 'list' for returning a list of all values

Value

a named vector (or list depending on how the multiMap argument is chosen) providing a mapping

Author(s)

Fabian Mueller

demuellae/muRtools documentation built on Sept. 8, 2023, 4:32 p.m.