getTargetFromLolaDb: getTargetFromLolaDb
In demuellae/muRtools: Mueller's R tools
getTargetFromLolaDb R Documentation
getTargetFromLolaDb
Description
retrieve or guess the target from a LOLA DB object. Here, target typically
refers to antibodies for ChIP-seq experiments, but could also refer to other annotations
(e.g. motifs in TF motif databases, annotation according to UCSC features etc.)
Usage
getTargetFromLolaDb(lolaDb)
Arguments
lolaDb
LOLA DB object as returned by LOLA::loadRegionDB or loadLolaDbs
Value
character vector with targets
Author(s)
Fabian Mueller
Examples
# download LOLA DB
lolaDest <- tempfile()
dir.create(lolaDest)
lolaDirs <- downloadLolaDbs(lolaDest, dbs="LOLACore")
lolaDb <- loadLolaDbs(lolaDirs[["hg19"]])
getTargetFromLolaDb(lolaDb)
demuellae/muRtools documentation built on Sept. 8, 2023, 4:32 p.m.
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| getTargetFromLolaDb | R Documentation |
getTargetFromLolaDb
Description
retrieve or guess the target from a LOLA DB object. Here, target typically refers to antibodies for ChIP-seq experiments, but could also refer to other annotations (e.g. motifs in TF motif databases, annotation according to UCSC features etc.)
Usage
getTargetFromLolaDb(lolaDb)
Arguments
lolaDb |
LOLA DB object as returned by |
Value
character vector with targets
Author(s)
Fabian Mueller
Examples
# download LOLA DB
lolaDest <- tempfile()
dir.create(lolaDest)
lolaDirs <- downloadLolaDbs(lolaDest, dbs="LOLACore")
lolaDb <- loadLolaDbs(lolaDirs[["hg19"]])
getTargetFromLolaDb(lolaDb)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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