Files in demuellae/muRtools
Mueller's R tools
.gitignore
DESCRIPTION
NAMESPACE
R/analysisConfig.R
R/clustering.R
R/colors.R
R/commandLine.R
R/develTools.R
R/dimRed.R
R/encodeProjectTools.R
R/enrichmentTools.R
R/epigeneticsConfig.R
R/epigeneticsData.R
R/epigeneticsUtils.R
R/genomicRegions.R
R/heatmaps.R
R/listOps.R
R/lolaUtils.R
R/miscPlots.R
R/muKDEplots.R
R/muMakeTrans.R
R/muPairs.R
R/muRtools.R
R/muScatter.R
R/mu_ggplots2_ext.R
R/normalize.R
R/rnbeads.R
R/statTest.R
R/stringOps.R
R/txdb.R
R/wrappers.R
README.md
inst/extdata/deep_chip_ctrl_regions.hg19.bed
inst/extdata/geneLists.json
man/HistoneModStr.Rd
man/aggregateDf.Rd
man/bed2GRanges.Rd
man/bedTobigBed.Rd
man/camel2underscore.Rd
man/chordDiagramFromContingencyTable.Rd
man/col.text.2.hex.Rd
man/colorize.value.Rd
man/colpal.Rd
man/colpal.cont.Rd
man/colpal.epigenetics.Rd
man/combinationList.Rd
man/countPairwiseOverlaps.Rd
man/create.densityScatter.Rd
man/densRanks.Rd
man/df2granges.Rd
man/diagDivCellHeatmap.Rd
man/diagDivHeatmap.Rd
man/dist.correlation.Rd
man/downloadLolaDbs.Rd
man/get.encode.cell.table.Rd
man/getAnnotGrl.gencode.Rd
man/getAssocTestRes.pca.Rd
man/getCellTypesFromLolaDb.Rd
man/getClusteringDendrogram.Rd
man/getColorFun.Rd
man/getConfig.Rd
man/getDimRedCoords.mds.Rd
man/getDimRedCoords.pca.Rd
man/getDimRedCoords.tsne.Rd
man/getDimRedCoords.umap.Rd
man/getDimRedPlot.Rd
man/getGeneAnnotMap.Rd
man/getGenomeGr.Rd
man/getGenomeObject.Rd
man/getHashString.Rd
man/getNamesFromLolaDb.Rd
man/getPointDensity.Rd
man/getRegionSet.Rd
man/getRelatedAnaDirFromConfig.Rd
man/getSeqlengths4assembly.Rd
man/getTargetFromLolaDb.Rd
man/getTilingRegions.Rd
man/getTxDb.gencode.Rd
man/ggAutoColorScale.Rd
man/ggMessagePlot.Rd
man/ggplot2.distr.Rd
man/ggplot2.heatmap.Rd
man/ggsave4doc.Rd
man/ggtemp.Rd
man/goEnrichment.Rd
man/grGeneAnnot.Rd
man/grLiftOver.Rd
man/grSignedDistance.Rd
man/grTile.Rd
man/granges2bed.Rd
man/granges2bed.igv.Rd
man/granges2igv.Rd
man/indicesInList.Rd
man/kde.plot.Rd
man/loadLolaDbs.Rd
man/loadRnBeadsAnalysis.Rd
man/lolaBarPlot.Rd
man/lolaBoxPlotPerTarget.Rd
man/lolaRegionSetHeatmap.Rd
man/lolaVolcanoPlot.Rd
man/makeTrans.Rd
man/matchStrand.Rd
man/muRtools.Rd
man/normalize.str.Rd
man/normalizePercentile.Rd
man/normalizeRank.Rd
man/pairsDensCor.Rd
man/panel.cor.col.Rd
man/panel.density.Rd
man/parse.cl.args.Rd
man/parse.encode.cv.file.Rd
man/pdftemp.Rd
man/plotAllDimRed.Rd
man/plotColpal.Rd
man/plotCorPhm.Rd
man/plotDimRed.Rd
man/plotFisherTest.Rd
man/pngtemp.Rd
man/randomGroupedHeatmap.Rd
man/readTab.Rd
man/reloadPackage.Rd
man/rowTtest.Rd
man/runLOLA_list.Rd
man/scatter.twogroups.Rd
man/setGenomeProps.Rd
man/sortGr.Rd
man/strTrim.Rd
man/summarizeSetOverlap.Rd
man/testAssoc.Rd
man/textSearch.Rd
man/theme_nogrid.Rd
man/umapParamGridReport.Rd
man/underscore2camel.Rd
man/unloadPackage.Rd
man/writeTab.Rd
