API for demuellae/muRtools
Mueller's R tools

Global functions
aggregateDf Man page Source code
bed2GRanges Man page Source code
bedTobigBed Man page Source code
camel2underscore Man page Source code
cfg_parse_commandr_slurm Source code
cfg_parse_directory Source code
cfg_parse_directory_create Source code
cfg_parse_directory_existing Source code
cfg_parse_directory_non_existing Source code
cfg_parse_directory_warn_existing Source code
cfg_parse_file Source code
cfg_parse_file_existing Source code
cfg_parse_file_non_existing Source code
cfg_parse_file_warn_existing Source code
cfg_parse_json_colormap Source code
cfg_parse_string Source code
col.text.2.hex Man page Source code
colgrad.methylation.rb Man page
colgrad.methylation.yb Man page
colorize.value Man page Source code
colpal,colpal.cb,colpal.colpal.bde Man page
colpal.bde Man page
colpal.cb Man page
colpal.corpid Man page
colpal.histone Man page
colpal.histone,colpal.histone.ihec,colgrad.methylation.rb,colgra Man page
colpal.histone.ihec Man page
colpal.mu.cat Man page
colpal.nature Man page
combinationList Man page Source code
containsHistoneModStr Man page Source code
containsHistoneModStr,getHistoneFromHistoneModStr,getAaPosFromHi Man page
create.densityScatter Man page Source code
densRanks Man page Source code
df2granges Man page Source code
dist.correlation Man page Source code
downloadLolaDbs Man page Source code
get.encode.cell.table Man page Source code
getAaPosFromHistoneModStr Man page Source code
getAaTypeFromHistoneModStr Man page Source code
getAssocTestRes.pca Man page Source code
getCellTypesFromLolaDb Man page Source code
getClusteringDendrogram Man page Source code
getConfig Man page Source code
getDimRedCoords.mds Man page Source code
getDimRedCoords.pca Man page Source code
getDimRedCoords.tsne Man page Source code
getDimRedPlot Man page Source code
getGenomeObject Man page Source code
getHashString Man page Source code
getHistoneFromHistoneModStr Man page Source code
getModFromHistoneModStr Man page Source code
getNamesFromLolaDb Man page Source code
getPointDensity Man page Source code
getRegionSet Man page Source code
getRelatedAnaDirFromConfig Man page Source code
getRoadmapMdFromId Source code
getSeqlengths4assembly Man page Source code
getTargetFromLolaDb Man page Source code
getTilingRegions Man page Source code
getTxDb.gencode Man page Source code
ggMessagePlot Man page Source code
ggplot2.heatmap Man page Source code
ggsave4doc Man page Source code
ggtemp Man page Source code
grGeneAnnot Man page Source code
grLiftOver Man page Source code
grTile Man page Source code
granges2bed Man page Source code
granges2bed.igv Man page Source code
granges2igv Man page Source code
gviz_bwScheme Man page Source code
indicesInList Man page Source code
kde.plot Man page
kde.plot.matrix Man page Source code
kde.plot.simple Man page Source code
loadLolaDbs Man page Source code
loadRnBeadsAnalysis Man page Source code
lolaBarPlot Man page Source code
lolaBoxPlotPerTarget Man page Source code
lolaPrepareDataFrameForPlot Source code
lolaVolcanoPlot Man page Source code
makeTrans Man page Source code
matchHistoneModStr Man page Source code
matchStrand Man page Source code
normalize.str Man page Source code
normalizeHistoneModStr Man page Source code
pairsDensCor Man page Source code
panel.cor.col Man page Source code
panel.density Man page Source code
parse.cl.args Man page Source code
parse.encode.cv.file Man page Source code
pdftemp Man page Source code
plotAllDimRed Man page Source code
plotCorPhm Man page Source code
plotDimRed Man page Source code
pngtemp Man page Source code
readTab Man page Source code
reloadPackage Man page Source code
rnb.xml2options.backwardsCompatible Source code
scatter.twogroups Man page Source code
setGenomeProps Man page Source code
strTrim Man page Source code
testAssoc Man page Source code
theme_nogrid Man page Source code
underscore2camel Man page Source code
writeTab Man page Source code
demuellae/muRtools documentation built on July 13, 2018, 6:04 a.m.