getSeqlengths4assembly: getSeqlengths4assembly
In demuellae/muRtools: Mueller's R tools
View source: R/genomicRegions.R
getSeqlengths4assembly R Documentation
getSeqlengths4assembly
Description
retrieve chromosomes/contigs and their sequence lengths for known assemblies
Usage
getSeqlengths4assembly(assembly, onlyMainChrs = FALSE, adjChrNames = TRUE)
Arguments
assembly
assembly
onlyMainChrs
should only main chromosomes, i.e. chr[1-N] + chr[XYM] be returned (e.g. not ChrUn*, *_random, ...)
adjChrNames
should the prefix "chr" be added to main chromosomes if not already present and chrMT be renamed to chrM?
Value
named vector of chromosomes/contigs and sequence lengths
demuellae/muRtools documentation built on Sept. 8, 2023, 4:32 p.m.
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View source: R/genomicRegions.R
| getSeqlengths4assembly | R Documentation |
getSeqlengths4assembly
Description
retrieve chromosomes/contigs and their sequence lengths for known assemblies
Usage
getSeqlengths4assembly(assembly, onlyMainChrs = FALSE, adjChrNames = TRUE)
Arguments
assembly |
assembly |
onlyMainChrs |
should only main chromosomes, i.e. chr[1-N] + chr[XYM] be returned (e.g. not ChrUn*, *_random, ...) |
adjChrNames |
should the prefix "chr" be added to main chromosomes if not already present and chrMT be renamed to chrM? |
Value
named vector of chromosomes/contigs and sequence lengths
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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