Man pages for demuellae/muRtools
Mueller's R tools

aggregateDfaggregateDf
bed2GRangesbed2GRanges
bedTobigBedbedTobigBed
camel2underscorecamel2underscore
chordDiagramFromContingencyTablechordDiagramFromContingencyTable
colorize.valuecolorize.value
colpalCustom Color Paletes
colpal.contcolpal.cont
colpal.epigeneticsCustom Color Paletes for epigenetic modifications
col.text.2.hexcol.text.2.hex
combinationListcombinationList
countPairwiseOverlapscountPairwiseOverlaps
create.densityScattercreate.densityScatter
densRanksdensRanks
df2grangesdf2granges
diagDivCellHeatmapdiagDivCellHeatmap
diagDivHeatmapdiagDivHeatmap
dist.correlationdist.correlation
downloadLolaDbsdownloadLolaDbs
getAnnotGrl.gencodegetAnnotGrl.gencode
getAssocTestRes.pcagetAssocTestRes.pca
getCellTypesFromLolaDbgetCellTypesFromLolaDb
getClusteringDendrogramgetClusteringDendrogram
getColorFungetColorFun
getConfiggetConfig
getDimRedCoords.mdsgetDimRedCoords.mds
getDimRedCoords.pcagetDimRedCoords.pca
getDimRedCoords.tsnegetDimRedCoords.tsne
getDimRedCoords.umapgetDimRedCoords.umap
getDimRedPlotgetDimRedPlot
get.encode.cell.tableget.encode.cell.table
getGeneAnnotMapgetGeneAnnotMap
getGenomeGrgetGenomeGr
getGenomeObjectgetGenomeObject
getHashStringgetHashString
getNamesFromLolaDbgetNamesFromLolaDb
getPointDensitygetPointDensity
getRegionSetgetRegionSet
getRelatedAnaDirFromConfiggetRelatedAnaDirFromConfig
getSeqlengths4assemblygetSeqlengths4assembly
getTargetFromLolaDbgetTargetFromLolaDb
getTilingRegionsgetTilingRegions
getTxDb.gencodegetTxDb.gencode
ggAutoColorScaleggAutoColorScale
ggMessagePlotggMessagePlot
ggplot2.distrggplot2.distr
ggplot2.heatmapggplot2.heatmap
ggsave4docggsave4doc
ggtempggtemp
goEnrichmentgoEnrichment
granges2bedgranges2bed
granges2bed.igvgranges2bed.igv
granges2igvgranges2igv
grGeneAnnotgrGeneAnnot
grLiftOvergrLiftOver
grSignedDistancegrSignedDistance
grTilegrTile
HistoneModStrMethods for recognizing histone modifications from strings
indicesInListindicesInList
kde.plotkde.plot
loadLolaDbsloadLolaDbs
loadRnBeadsAnalysisloadRnBeadsAnalysis
lolaBarPlotlolaBarPlot
lolaBoxPlotPerTargetlolaBoxPlotPerTarget
lolaRegionSetHeatmaplolaRegionSetHeatmap Plot a heatmap in which the rows are...
lolaVolcanoPlotlolaVolcanoPlot
makeTransmakeTrans
matchStrandmatchStrand
muRtoolsmuRtools: Mueller's R tools
normalizePercentilenormalizePercentile
normalizeRanknormalizeRank
normalize.strnormalize.str
pairsDensCorpairsDensCor
panel.cor.colpanel.cor.col
panel.densitypanel.density
parse.cl.argsparse.cl.args
parse.encode.cv.fileparse.encode.cv.file
pdftemppdftemp
plotAllDimRedplotAllDimRed
plotColpalplotColpal
plotCorPhmplotCorPhm
plotDimRedgetDimRedPlot
plotFisherTestplotFisherTest
pngtemppngtemp
readTabreadTab
reloadPackagereloadPackage
runLOLA_listrunLOLA_list More robust version of lola for lists of user...
scatter.twogroupsscatter.twogroups
setGenomePropssetGenomeProps
sortGrsortGr
strTrimstrTrim
testAssoctestAssoc
theme_nogridtheme_nogrid
umapParamGridReportumapParamGridReport
underscore2camelunderscore2camel
unloadPackageunloadPackage
writeTabwriteTab
demuellae/muRtools documentation built on Jan. 20, 2020, 3:05 a.m.