Man pages for demuellae/muRtools
Mueller's R tools

bed2GRangesbed2GRanges
bedTobigBedbedTobigBed
camel2underscorecamel2underscore
colorize.valuecolorize.value
colpalCustom Color Paletes
colpal.epigeneticsCustom Color Paletes for epigenetic modifications
col.text.2.hexcol.text.2.hex
combinationListcombinationList
create.densityScattercreate.densityScatter
densRanksdensRanks
df2grangesdf2granges
dist.correlationdist.correlation
getClusteringDendrogramgetClusteringDendrogram
getConfiggetConfig
getDimRedCoords.mdsgetDimRedCoords.mds
getDimRedCoords.pcagetDimRedCoords.pca
getDimRedCoords.tsnegetDimRedCoords.tsne
getDimRedPlotgetDimRedPlot
get.encode.cell.tableget.encode.cell.table
getGenomeObjectgetGenomeObject
getHashStringgetHashString
getPointDensitygetPointDensity
getRegionSetgetRegionSet
getRelatedAnaDirFromConfiggetRelatedAnaDirFromConfig
getSeqlengths4assemblygetSeqlengths4assembly
getTilingRegionsgetTilingRegions
getTxDb.gencodegetTxDb.gencode
ggplot2.heatmapggplot2.heatmap
ggsave4docggsave4doc
ggtempggtemp
granges2bedgranges2bed
granges2bed.igvgranges2bed.igv
granges2igvgranges2igv
grGeneAnnotgrGeneAnnot
grLiftOvergrLiftOver
grTilegrTile
HistoneModStrMethods for recognizing histone modifications from strings
indicesInListindicesInList
kde.plotkde.plot
loadRnBeadsAnalysisloadRnBeadsAnalysis
makeTransmakeTrans
matchStrandmatchStrand
normalize.strnormalize.str
pairsDensCorpairsDensCor
panel.cor.colpanel.cor.col
panel.densitypanel.density
parse.cl.argsparse.cl.args
parse.encode.cv.fileparse.encode.cv.file
pdftemppdftemp
plotAllDimRedplotAllDimRed
plotCorPhmplotCorPhm
plotDimRedgetDimRedPlot
pngtemppngtemp
readTabreadTab
reloadPackagereloadPackage
scatter.twogroupsscatter.twogroups
setGenomePropssetGenomeProps
strTrimstrTrim
theme_nogridtheme_nogrid
underscore2camelunderscore2camel
demuellae/muRtools documentation built on May 21, 2018, 11:57 a.m.