getClusteringDendrogram: getClusteringDendrogram

In demuellae/muRtools: Mueller's R tools

getClusteringDendrogram

Description

Get a clustering dendrogram using hierarchical clustering (wrapper)

Usage

getClusteringDendrogram(
  X,
  samplesOrdered = colnames(X),
  distMethod = "cor",
  linkMethod = "ward.D",
  corMethod = "pearson"
)

Arguments

X	A matrix for which the sample clustering dendrogram should be computed. Samples correspond to columns and features correspond to rows. Alternatively, X can be a distance matrix (dist object)
samplesOrdered	character vector specifying the preferred order of samples
distMethod	distance metric to be used for clusteing. must be either "cor" or a valid distance method for dist()
linkMethod	linkage method (see hclust for details)
corMethod	method for computing correlation coefficients. Only relevant if distMethod=="cor".

Value

clustering dendrogram (dendrogram object)

Author(s)

Fabian Mueller

demuellae/muRtools documentation built on Nov. 6, 2024, 9:44 a.m.