getCellTypesFromLolaDb: getCellTypesFromLolaDb

View source: R/lolaUtils.R

getCellTypesFromLolaDbR Documentation

getCellTypesFromLolaDb

Description

retrieve or guess cell types from a LOLA DB object

Usage

getCellTypesFromLolaDb(lolaDb)

Arguments

lolaDb

LOLA DB object as returned by LOLA::loadRegionDB or loadLolaDbs

Value

character vector with cell types

Author(s)

Fabian Mueller

Examples


# download LOLA DB
lolaDest <- tempfile()
dir.create(lolaDest)
lolaDirs <- downloadLolaDbs(lolaDest, dbs="LOLACore")
lolaDb <- loadLolaDbs(lolaDirs[["hg19"]])
getCellTypesFromLolaDb(lolaDb)


demuellae/muRtools documentation built on Sept. 8, 2023, 4:32 p.m.