bedTobigBed: bedTobigBed
In demuellae/muRtools: Mueller's R tools
View source: R/genomicRegions.R
bedTobigBed R Documentation
bedTobigBed
Description
Convert a bed file to bigBed. requires the 'bedToBigBed' tool
Usage
bedTobigBed(
bedFn,
chromSizes,
bbFn = paste0(gsub("\\.bed$", "", bedFn), ".bb"),
bedToBigBed = "bedToBigBed"
)
Arguments
bedFn
filename of the bed file
chromSizes
named vector of chromosome sizes
bbFn
filename to save the bigBed file to
bedToBigBed
executable of the 'bedToBigBed' tool
Value
nothing of particular interest
demuellae/muRtools documentation built on Sept. 8, 2023, 4:32 p.m.
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View source: R/genomicRegions.R
| bedTobigBed | R Documentation |
bedTobigBed
Description
Convert a bed file to bigBed. requires the 'bedToBigBed' tool
Usage
bedTobigBed(
bedFn,
chromSizes,
bbFn = paste0(gsub("\\.bed$", "", bedFn), ".bb"),
bedToBigBed = "bedToBigBed"
)
Arguments
bedFn |
filename of the bed file |
chromSizes |
named vector of chromosome sizes |
bbFn |
filename to save the bigBed file to |
bedToBigBed |
executable of the 'bedToBigBed' tool |
Value
nothing of particular interest
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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