countPairwiseOverlaps: countPairwiseOverlaps

View source: R/genomicRegions.R

countPairwiseOverlapsR Documentation

countPairwiseOverlaps

Description

Fast counting of pairwise overlaps between two lists of region sets

Usage

countPairwiseOverlaps(grl1, grl2, ...)

Arguments

grl1

list of GRanges or GRangesList object 1

grl2

list of GRanges or GRangesList object 2

...

arguments passed on to findOverlaps

Value

an integer matrix containing pairwise overlaps between elements in grl1 and grl1


demuellae/muRtools documentation built on Sept. 8, 2023, 4:32 p.m.