getDimRedCoords.umap: getDimRedCoords.umap

View source: R/dimRed.R

getDimRedCoords.umapR Documentation

getDimRedCoords.umap

Description

Get dimension reduction coordinates using the UMAP method

Usage

getDimRedCoords.umap(X, distMethod = "euclidean", dims = c(1, 2), ...)

Arguments

X

A matrix on which the dimension reduction is to be performed

distMethod

distance metric to be employed

dims

dimensions to return from the reduction

...

parameters passed on to uwot::umap()

Value

a matrix containing two columns for the reduced dimensions and the same number of rows as X

Author(s)

Fabian Mueller


demuellae/muRtools documentation built on Nov. 6, 2024, 9:44 a.m.