granges2igv: granges2igv

In demuellae/muRtools: Mueller's R tools

granges2igv

Description

Save a GRanges object to a IGV file

Usage

granges2igv(
  gr,
  fn,
  addStrand = FALSE,
  addAnnotCols = TRUE,
  doSort = TRUE,
  toTDF = FALSE
)

Arguments

gr	GRanges object
fn	filename to save IGV file to
addAnnotCols	add the columns stored in elementMetadata of GRanges
doSort	sort the regions before writing the output
toTDF	convert to TDF file. Requires that "igvtools" is executable from the current path
sc	score vector or column in elementMetadata of GRanges

Value

result of writing the table (see write.table)

demuellae/muRtools documentation built on Nov. 6, 2024, 9:44 a.m.