setGenomeProps: setGenomeProps

In demuellae/muRtools: Mueller's R tools

setGenomeProps

Description

Set the genome properties for a GRanges or GAlignments object given the name of a genome assembly

Usage

setGenomeProps(
  gr,
  assembly,
  dropUnknownChrs = TRUE,
  adjChrNames = TRUE,
  silent = FALSE,
  ...
)

Arguments

gr	GRanges object or GAlignments object to modify
assembly	assembly
dropUnknownChrs	discard entries with seqnames not supported by assembly
adjChrNames	should the prefix "chr" be added to main chromosomes if not already present and chrMT be renamed to chrM?
silent	Limit logging to most important messages
...	arguments passed on to getSeqlengths4assembly

Value

GRanges object with genome properties set

demuellae/muRtools documentation built on Sept. 8, 2023, 4:32 p.m.