loadRnBeadsAnalysis: loadRnBeadsAnalysis

In demuellae/muRtools: Mueller's R tools

loadRnBeadsAnalysis

Description

Loads RnBeads analysis results (RnBSet object, differential methylation) and optionally runs the corresponding preanalysis script and sets options

Usage

loadRnBeadsAnalysis(
  input,
  type = "cluster_run",
  preprocessed = TRUE,
  setOptions = TRUE,
  preAnalysis = TRUE,
  diffMeth = TRUE
)

Arguments

input	input directory
type	analysis type. Currently only "cluster_run" is supported
preprocessed	determines the type of RnBSet object to be loaded. If TRUE (default) the preprossed/filtered object will be loaded. Otherwise the raw, imported object
setOptions	should the analysis options be set from the options settings of the RnBeads run?
preAnalysis	should the corresponding preanalysis script be called
diffMeth	should the differential analysis result be loaded in addition?

Value

A list containing the RnBSet object (list item rnbs) and optionally the differential methylaiton result (list item diffmeth)

Author(s)

Fabian Mueller

demuellae/muRtools documentation built on Nov. 6, 2024, 9:44 a.m.