HistoneModStr: Methods for recognizing histone modifications from strings

In demuellae/muRtools: Mueller's R tools

Methods for recognizing histone modifications from strings

Description

Methods for recognizing histone modifications from strings

Usage

containsHistoneModStr(s)

getHistoneFromHistoneModStr(s)

getAaTypeFromHistoneModStr(s)

getAaPosFromHistoneModStr(s)

getModFromHistoneModStr(s)

normalizeHistoneModStr(s)

matchHistoneModStr(s1, s2)

Arguments

s	a string
s1	a string
s2	a string containsHistoneModStr Does a string contain the pattern for histone modifications? getHistoneFromHistoneModStr Retrive the histone from a string containing a histone modification pattern getAaTypeFromHistoneModStr Retrive the amino acid type from a string containing a histone modification pattern getAaPosFromHistoneModStr Retrive the amino acid position from a string containing a histone modification pattern getModFromHistoneModStr Retrive the modification from a string containing a histone modification pattern normalizeHistoneModStr normalize the histone modification if contained in a string matchHistoneModStr Do two strings contain the same histone modifications

Examples

s1 <- "H3K4me3"
s2 <- "h3k04ME3"
s3 <- "blubb5A27me3"
s4 <- "h3k27ac"
containsHistoneModStr(s1)
containsHistoneModStr(s3)
containsHistoneModStr(s4)
getHistoneFromHistoneModStr(s1)
getAaTypeFromHistoneModStr(s1)
getAaPosFromHistoneModStr(s1)
getModFromHistoneModStr(s1)
normalizeHistoneModStr(s1)
normalizeHistoneModStr(c(s1,s2,s3,s4))
matchHistoneModStr(s1,s2)
matchHistoneModStr(s1,s4)

demuellae/muRtools documentation built on Nov. 6, 2024, 9:44 a.m.