API for derele/MultiAmplicon
Metabarcoding and microbiome analysis using multiple amplicons

Global functions
MultiAmplicon Man page Source code
MultiAmplicon-class Man page
PairedDada Man page Source code
PairedDada-class Man page
PairedDerep-class Man page
PairedReadFileSet Man page Source code
PairedReadFileSet-class Man page
PrimerPairsSet Man page Source code
PrimerPairsSet-class Man page
[,MultiAmplicon,index,index,ANY-method Man page
[,MultiAmplicon,index,missing,ANY-method Man page
[,MultiAmplicon,missing,index,ANY-method Man page
[,MultiAmplicon,missing,missing,ANY-method Man page
[,PairedDada,index,missing,ANY-method Man page
[,PairedDerep,index,missing,ANY-method Man page
[,PairedReadFileSet,index,missing,ANY-method Man page
[,PrimerPairsSet,index,missing,ANY-method Man page
calcPropMerged Man page
calcPropMerged,MultiAmplicon-method Man page
carnivoreSeqRuns Man page
colnames,MultiAmplicon-method Man page
complainWhenAbsent Source code
concatenateDada Source code
concatenateDerep Source code
concatenateMergers Source code
concatenateMultiAmplicon Man page Source code
concatenatePairedReadFileSets Source code
concatenateRawCounts Source code
concatenateSequenceTable Source code
concatenateStratifiedFiles Source code
concatenateTaxonTable Source code
dadaMulti Man page Source code
derepMulti Man page Source code
dim,MultiAmplicon-method Man page
extractEllipsis Source code
fillSampleTables Man page Source code
getBlastTaxAnnot Man page Source code
getDadaF Man page Source code
getDadaR Man page Source code
getDerepF Man page Source code
getDerepR Man page Source code
getMergers Man page Source code
getPipelineSummary Man page Source code
getRawCounts Man page Source code
getSequenceTable Man page Source code
getSequenceTableNoChime Man page Source code
getSequencesFromTable Man page
getSequencesFromTable,MultiAmplicon-method Man page
getStratifiedFilesF Man page Source code
getStratifiedFilesR Man page Source code
length,PairedDada-method Man page
length,PairedDerep-method Man page
length,PairedReadFileSet-method Man page
length,PrimerPairsSet-method Man page
logical.to.numeric Source code
makeSequenceTableMulti Man page Source code
mergeMulti Man page Source code
name.to.numeric Source code
names,PrimerPairsSet-method Man page
ncol,MultiAmplicon-method Man page
nrow,MultiAmplicon-method Man page
paramMessage Source code
plotAmpliconNumbers Man page
plotAmpliconNumbers,MultiAmplicon-method Man page
plotAmpliconNumbers,matrix-method Man page
plotPipelineSummary Man page
plotPipelineSummary,MultiAmplicon-method Man page
plotPipelineSummary,data.frame-method Man page
removeChimeraMulti Man page Source code
replace_inf_range Source code
rownames,MultiAmplicon-method Man page
show,MultiAmplicon-method Man page
show,PairedReadFileSet-method Man page
show,PrimerPairsSet-method Man page
simpfy Source code
sortAmplicons Man page
sortAmplicons, Man page
sortAmplicons,MultiAmplicon-method Man page
sortAmplicons-Method Man page
derele/MultiAmplicon documentation built on April 15, 2019, 7:53 p.m.