dot-fillSampleTables: .fillSampleTables

In derele/MultiAmplicon: Metabarcoding and microbiome analysis using multiple amplicons

.fillSampleTables

Description

Fill sequence tables in a MultiAmplicon object to include selected samples for all amplicons.

Usage

.fillSampleTables(ST, samples)

Arguments

ST	a sequence tabel from a MultiAmplicon object
samples	a character vector giving names of samples to retain.

Details

In a MultiAmplicon object for some primer pairs some samples might have no amplified sequence variants at all. This function creates matrices including consistent samples for all the sequenceTableNoChime slots of a MultiAmplicon object and returnes filled tables for all requested samplese. Cells are filled with 0 (zeros) for samples originally not recoverd in an amplicon.

Value

a sequence table for use in a MultiAmplicon object

Author(s)

Emanuel Heitlinger

derele/MultiAmplicon documentation built on Dec. 11, 2024, 12:09 p.m.