getPipelineSummary: getPipelineSummary

Description Usage Arguments Details Value Author(s)

Description

Obtain summary data for amplicons run through the MultiAmplicon pipeline.

Usage

1

Arguments

MA

MultiAmplicon object with all slots filled for tracking.

Details

Get statistics on the number of samples (with read data), the number of unique sequence variants and the number of reads left after processing of amplicons in the MultiAmplicon pipeline. In some steps of the pipeline dada2 performs quality filtering excluding non-credible sequence variants.

Value

a data.frame of sample, unique sequences and sequencing reads numbers per amplicon.

Author(s)

Emanuel Heitlinger


derele/MultiAmplicon documentation built on May 15, 2019, 5:04 a.m.