getPipelineSummary: getPipelineSummary
In derele/MultiAmplicon: Metabarcoding and microbiome analysis using multiple amplicons
View source: R/pipeline_track.R
getPipelineSummary R Documentation
getPipelineSummary
Description
Obtain summary data for amplicons run through the MultiAmplicon pipeline.
Usage
getPipelineSummary(MA)
Arguments
MA
MultiAmplicon object with all slots filled for tracking.
Details
Get statistics on the number of samples (with read data), the
number of unique sequence variants and the number of reads left
after processing of amplicons in the MultiAmplicon pipeline. In
some steps of the pipeline dada2 performs quality filtering
excluding non-credible sequence variants.
Value
a data.frame of sample, unique sequences and sequencing
reads numbers per amplicon.
Author(s)
Emanuel Heitlinger
derele/MultiAmplicon documentation built on Oct. 14, 2023, 7:43 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/pipeline_track.R
| getPipelineSummary | R Documentation |
getPipelineSummary
Description
Obtain summary data for amplicons run through the MultiAmplicon pipeline.
Usage
getPipelineSummary(MA)
Arguments
MA |
MultiAmplicon object with all slots filled for tracking. |
Details
Get statistics on the number of samples (with read data), the number of unique sequence variants and the number of reads left after processing of amplicons in the MultiAmplicon pipeline. In some steps of the pipeline dada2 performs quality filtering excluding non-credible sequence variants.
Value
a data.frame of sample, unique sequences and sequencing reads numbers per amplicon.
Author(s)
Emanuel Heitlinger
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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