Files in derele/MultiAmplicon
Metabarcoding and microbiome analysis using multiple amplicons

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
MultiAmplicon.Rproj
NAMESPACE
R/allClasses.R R/annotateTaxa.R R/concatenate-methods.R R/data.R R/pipeline.R R/plot-methods.R R/show-methods.R R/sortAmplicons.R R/subset-methods.R README.md
appveyor.yml
codecov.yml
data/carnivoreSeqRuns.rda
docs/articles/MultiAmplicon-real-world-example.html
docs/articles/MultiAmplicon-real-world-example_files/figure-html/plottrack-1.png
docs/articles/MultiAmplicon-real-world-example_files/figure-html/tracking-1.png
docs/articles/MultiAmplicon-small-example.R
docs/articles/MultiAmplicon-small-example.html
docs/articles/MultiAmplicon-small-example_files/figure-html/plot-1.png
docs/articles/MultiAmplicon-small-example_files/figure-html/plot-2.png
docs/articles/MultiAmplicon-small-example_files/figure-html/plotAmpliconNumbers-1.png
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/MultiAmplicon-class.html
docs/reference/PairedDada-class.html
docs/reference/PairedDerep-class.html
docs/reference/PairedReadFileSet-class.html
docs/reference/PrimerPairsSet-class.html
docs/reference/calcPropMerged.html
docs/reference/carnivoreSeqRuns.html
docs/reference/dadaMulti.html
docs/reference/derepMulti.html
docs/reference/fillSampleTables.html
docs/reference/getPipelineSummary.html
docs/reference/index.html
docs/reference/makeSequenceTableMulti.html
docs/reference/mergeMulti.html
docs/reference/noChimeMulti.html
docs/reference/plotAmpliconNumbers.html
docs/reference/plotPipelineSummary.html
docs/reference/plot_Amplicon_numbers.html
docs/reference/removeChimeraMulti.html
docs/reference/sequenceTableMulti.html
docs/reference/sortAmplicons.html
inst/doc/MultiAmplicon-real-world-example.R inst/doc/MultiAmplicon-real-world-example.Rmd
inst/doc/MultiAmplicon-real-world-example.html
inst/doc/MultiAmplicon-small-example.R inst/doc/MultiAmplicon-small-example.Rmd
inst/doc/MultiAmplicon-small-example.html
inst/extdata/fastq/S00_F_filt.fastq.gz
inst/extdata/fastq/S00_R_filt.fastq.gz
inst/extdata/fastq/S01_F_filt.fastq.gz
inst/extdata/fastq/S01_R_filt.fastq.gz
inst/extdata/fastq/S02_F_filt.fastq.gz
inst/extdata/fastq/S02_R_filt.fastq.gz
inst/extdata/fastq/S03_F_filt.fastq.gz
inst/extdata/fastq/S03_R_filt.fastq.gz
inst/extdata/fastq/S04_F_filt.fastq.gz
inst/extdata/fastq/S04_R_filt.fastq.gz
inst/extdata/fastq/S05_F_filt.fastq.gz
inst/extdata/fastq/S05_R_filt.fastq.gz
inst/extdata/fastq/S06_F_filt.fastq.gz
inst/extdata/fastq/S06_R_filt.fastq.gz
inst/extdata/real_world_primers.csv
man/MultiAmplicon-class.Rd man/PairedDada-class.Rd man/PairedDerep-class.Rd man/PairedReadFileSet-class.Rd man/PrimerPairsSet-class.Rd man/calcPropMerged.Rd man/carnivoreSeqRuns.Rd man/concatenateMultiAmplicon.Rd man/dadaMulti.Rd man/derepMulti.Rd man/fillSampleTables.Rd man/getBlastTaxAnnot.Rd man/getPipelineSummary.Rd man/makeSequenceTableMulti.Rd man/mergeMulti.Rd man/plotAmpliconNumbers.Rd man/plotPipelineSummary.Rd man/removeChimeraMulti.Rd man/sortAmplicons.Rd tests/testthat.R tests/testthat/test_MultiAmplicon.R vignettes/MultiAmplicon-real-world-example.Rmd vignettes/MultiAmplicon-small-example.Rmd
derele/MultiAmplicon documentation built on April 15, 2019, 7:53 p.m.