Man pages for derele/MultiAmplicon
Metabarcoding and microbiome analysis using multiple amplicons

calcPropMergedcalcPropMerged
carnivoreSeqRunsSequencing run files for the carnivore biome dataset
concatenateMultiAmpliconconcatenateMultiAmplicon
dadaMultidadaMulti
derepMultiderepMulti
fillSampleTablesfillSampleTables
getBlastTaxAnnotgetBlastTaxAnnot
getPipelineSummarygetPipelineSummary
makeSequenceTableMultimakeSequenceTableMulti
mergeMultimergeMulti
MultiAmplicon-classThe central data structure of the MultiAmplicon package
PairedDada-classPairedDada-class
PairedDerep-classPairedDerep-class
PairedReadFileSet-classA class representing file paths to paired end reads.
plotAmpliconNumbersplotAmpliconNumbers
plotPipelineSummaryplotPipelineSummary
PrimerPairsSet-classA class representing sequences of forward and reverse...
removeChimeraMultiremoveChimeraMulti
sortAmpliconssortAmplicons
derele/MultiAmplicon documentation built on April 15, 2019, 7:53 p.m.