plotPipelineSummary: plotPipelineSummary
In derele/MultiAmplicon: Metabarcoding and microbiome analysis using multiple amplicons
plotPipelineSummary R Documentation
plotPipelineSummary
Description
Plot summary data for amplicons run through the MultiAmplicon pipeline.
Usage
plotPipelineSummary(MA)
Arguments
MA
MultiAmplicon object with all slots filled for tracking.
Details
Plot statistics on the number of samples (with read data), the
number of unique sequence variants and the number of reads left
after processing of amplicons in the MultiAmplicon pipeline. In
some steps of the pipeline dada2 performs quality filtering
excluding non-credible sequence variants.
Value
a ggplot object
Author(s)
Emanuel Heitlinger
derele/MultiAmplicon documentation built on Oct. 14, 2023, 7:43 p.m.
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| plotPipelineSummary | R Documentation |
plotPipelineSummary
Description
Plot summary data for amplicons run through the MultiAmplicon pipeline.
Usage
plotPipelineSummary(MA)
Arguments
MA |
MultiAmplicon object with all slots filled for tracking. |
Details
Plot statistics on the number of samples (with read data), the number of unique sequence variants and the number of reads left after processing of amplicons in the MultiAmplicon pipeline. In some steps of the pipeline dada2 performs quality filtering excluding non-credible sequence variants.
Value
a ggplot object
Author(s)
Emanuel Heitlinger
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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