Dereplicate sequences in fastq files.
MultiAmplicon object to be dereplicated.
number or compute cores for parallel dereplication of different amplicons (values > 1 are only allowed on Unix/Linux systems).
logical argument indicating whether a
derep slot should be filled with a single sequence recovered
in only one sample. Defaults to FALSE meaning that empty derep
objects are created in such a case. Keeping instead single
sequence derep objects (setting this to
arguments to be passed to
An interface to
derepFastq, which itself uses
FastqStreamer for dereplicating amplicon
sequences from fastq or compressed fastq
FastqStreamer uses a streaming
interface and can be used on low memory machines (see
MultiAmplicon object with paired derep slot (forward derepF and reverse derepR) filled.
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