calcPropMerged: calcPropMerged
In derele/MultiAmplicon: Metabarcoding and microbiome analysis using multiple amplicons
calcPropMerged R Documentation
calcPropMerged
Description
Calculate the proportion of merged sequences for a MultiAmplicon
object.
Usage
calcPropMerged(MA)
## S4 method for signature 'MultiAmplicon'
calcPropMerged(MA)
Arguments
MA
MultiAmplicon object with the mergers slot
filled.
Details
Merging using dadaMulti can result in loss of
sequences with too little overlap. This function determines what
proporton of sequences were merged using mergeMulti
for each amplicon in a MultiAmplicon object.
Value
a vector of proportions of merged reads for each amplicon
(potentially named).
Author(s)
Emanuel Heitlinger
derele/MultiAmplicon documentation built on Oct. 14, 2023, 7:43 p.m.
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| calcPropMerged | R Documentation |
calcPropMerged
Description
Calculate the proportion of merged sequences for a MultiAmplicon object.
Usage
calcPropMerged(MA)
## S4 method for signature 'MultiAmplicon'
calcPropMerged(MA)
Arguments
MA |
MultiAmplicon object with the |
Details
Merging using dadaMulti can result in loss of
sequences with too little overlap. This function determines what
proporton of sequences were merged using mergeMulti
for each amplicon in a MultiAmplicon object.
Value
a vector of proportions of merged reads for each amplicon (potentially named).
Author(s)
Emanuel Heitlinger
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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