Man pages for derele/MultiAmplicon
Metabarcoding and microbiome analysis using multiple amplicons
| addSampleData | addSampleData |
| blastTaxAnnot | blastTaxAnnot |
| calcPropMerged | calcPropMerged |
| carnivoreSeqRuns | Download sequencing run files for a carnivore biome dataset |
| concatenateMultiAmplicon | concatenateMultiAmplicon |
| dadaMulti | dadaMulti |
| derepMulti | derepMulti |
| dot-fillSampleTables | .fillSampleTables |
| dot-sumThingsOrNull | .sumThingsOrNull |
| getCounts | getCounts |
| getPipelineSummary | getPipelineSummary |
| makeSequenceTableMulti | makeSequenceTableMulti |
| mergeMulti | mergeMulti |
| MultiAmplicon-class | The central data structure of the MultiAmplicon package |
| PairedReadFileSet-class | A class representing file paths to paired end reads. |
| plotAmpliconNumbers | plotAmpliconNumbers |
| plotPipelineSummary | plotPipelineSummary |
| PrimerPairsSet-class | A class representing sequences of forward and reverse... |
| removeChimeraMulti | removeChimeraMulti |
| sortAmplicons | sortAmplicons |
| toPhyloseq | toPhyloseq |
