dozmorovlab/HiCcompare
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets

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dozmorovlab/HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
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API

API for dozmorovlab/HiCcompare
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets

Global functions
.add.CNV Source code Source code
.add.bias Source code Source code
.adjust_pval Source code
.calc.diff.thresh Source code
.calc.pval Source code
.calc_z2 Source code
.check_CNV Source code
.is.whole Source code
.loess.as Source code
.loess.matrix Source code
.no.bias Source code Source code
.normal.bias Source code Source code
.perm.test Source code
.powerlaw Source code Source code
.prop.zero.linear Source code Source code
.reset_par Source code
.sim.NBvalue Source code Source code
.sim.differences Source code Source code
.sim.mat Source code Source code
.split_cent Source code
HMEC.chr10 Man page
HMEC.chr22 Man page
HiCcompare Man page
HiCcompare-package Man page
KRnorm Man page Source code
MA_norm Man page Source code
MD.plot1 Man page Source code
MD.plot2 Man page Source code
NHEK.chr10 Man page
NHEK.chr22 Man page
SCN Man page Source code
brain_table Man page
centromere_locations Man page
cooler Man page
cooler2bedpe Man page Source code
cooler2sparse Man page Source code
create.hic.table Man page Source code
filter_params Man page Source code
full2sparse Man page Source code
hg19_blacklist Man page
hg38_blacklist Man page
hic_compare Man page Source code
hic_diff Man page Source code
hic_loess Man page Source code
hic_simulate Man page Source code
hicpro2bedpe Man page Source code
hmec.IS Man page
make_InteractionSet Man page Source code
manhattan_plot Man page Source code
nhek.IS Man page
randomize_IFs Source code
remove_centromere Man page Source code
sim.other.methods Man page Source code
sim_matrix Man page Source code
sparse2full Man page Source code
split_centromere Man page Source code
total_sum Man page Source code
visualize_pvals Man page Source code
volcano Source code
dozmorovlab/HiCcompare documentation built on June 30, 2023, 3:09 a.m.

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