API for dozmorovlab/HiCcompare
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets

Global functions
HMEC.chr10 Man page
HMEC.chr22 Man page
HiCcompare Man page
HiCcompare-package Man page
KRnorm Man page Source code
MA_norm Man page Source code
MD.plot1 Man page Source code
MD.plot2 Man page Source code
NHEK.chr10 Man page
NHEK.chr22 Man page
SCN Man page Source code
add.CNV Source code Source code
add.bias Source code Source code
adjust_pval Source code
brain_table Man page
calc.diff.thresh Source code
calc.pval Source code
calc_z2 Source code
centromere_locations Man page
check_CNV Source code
cooler Man page
cooler2sparse Man page Source code
create.hic.table Man page Source code
filter_params Man page Source code
full2sparse Man page Source code
get_CNV Man page Source code
hg19_blacklist Man page
hg38_blacklist Man page
hic_compare Man page Source code
hic_diff Man page Source code
hic_loess Man page Source code
hic_simulate Man page Source code
hicpro2bedpe Man page Source code
hmec.IS Man page
loess.as Source code
loess.matrix Source code
make_InteractionSet Man page Source code
manhattan_plot Man page Source code
nhek.IS Man page
no.bias Source code Source code
normal.bias Source code Source code
perm.test Source code
powerlaw Source code Source code
prop.zero.linear Source code Source code
randomize_IFs Source code
remove_centromere Man page Source code
reset_par Source code
s.whole Source code
sim.NBvalue Source code Source code
sim.differences Source code Source code
sim.mat Source code Source code
sim.other.methods Man page Source code
sim_matrix Man page Source code
sparse2full Man page Source code
split_cent Source code
split_centromere Man page Source code
total_sum Man page Source code
visualize_pvals Man page Source code
volcano Source code
dozmorovlab/HiCcompare documentation built on Sept. 27, 2018, 3:39 a.m.