SCN: SCN normalization from Cournac 2012
In dozmorovlab/HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
View source: R/Cournac_normalization.R
SCN R Documentation
SCN normalization from Cournac 2012
Description
SCN normalization from Cournac 2012
Usage
SCN(a, max.iter = 10)
Arguments
a
The matrix to be normalized. Any cols/rows that sum to
0 will be removed before normalization.
max.iter
maximum number of iterations to be performed
Details
Performs Sequential Component Normalization as described by
Cournac. Coded using details in the manuscript.
Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J.
Normalization of a chromosomal contact map.
BMC Genomics. 2012;13: 436. doi:10.1186/1471-2164-13-436
Value
An SCN normalized matrix
Examples
m <- matrix(rpois(100, 5), 10, 10)
SCN(m)
dozmorovlab/HiCcompare documentation built on June 30, 2023, 3:09 a.m.
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View source: R/Cournac_normalization.R
| SCN | R Documentation |
SCN normalization from Cournac 2012
Description
SCN normalization from Cournac 2012
Usage
SCN(a, max.iter = 10)
Arguments
a |
The matrix to be normalized. Any cols/rows that sum to 0 will be removed before normalization. |
max.iter |
maximum number of iterations to be performed |
Details
Performs Sequential Component Normalization as described by Cournac. Coded using details in the manuscript. Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J. Normalization of a chromosomal contact map. BMC Genomics. 2012;13: 436. doi:10.1186/1471-2164-13-436
Value
An SCN normalized matrix
Examples
m <- matrix(rpois(100, 5), 10, 10)
SCN(m)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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