KRnorm: Performs KR (Knight-Ruiz) normalization on a Hi-C matrix
In dozmorovlab/HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
View source: R/KRnormalization.R
KRnorm R Documentation
Performs KR (Knight-Ruiz) normalization on a Hi-C matrix
Description
Performs KR (Knight-Ruiz) normalization on a Hi-C matrix
Usage
KRnorm(A)
Arguments
A
the matrix to be normalized - any columns/rows of
0's will be removed before being normalized.
Details
Performs KR normalization. The function is a translation
of the 'Matlab' code provided in the 2012 manuscript.
Knight PA, Ruiz D. A fast algorithm for matrix balancing. IMA
Journal of Numerical Analysis. Oxford University Press; 2012; drs019.
Value
A KR normalized matrix
Examples
m <- matrix(rpois(100, 5), 10, 10)
KRnorm(m)
dozmorovlab/HiCcompare documentation built on June 30, 2023, 3:09 a.m.
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View source: R/KRnormalization.R
| KRnorm | R Documentation |
Performs KR (Knight-Ruiz) normalization on a Hi-C matrix
Description
Performs KR (Knight-Ruiz) normalization on a Hi-C matrix
Usage
KRnorm(A)
Arguments
A |
the matrix to be normalized - any columns/rows of 0's will be removed before being normalized. |
Details
Performs KR normalization. The function is a translation of the 'Matlab' code provided in the 2012 manuscript. Knight PA, Ruiz D. A fast algorithm for matrix balancing. IMA Journal of Numerical Analysis. Oxford University Press; 2012; drs019.
Value
A KR normalized matrix
Examples
m <- matrix(rpois(100, 5), 10, 10)
KRnorm(m)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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