nhek.IS: Hi-C data from NHEK cell line - chromosome 22 at 500kb...

nhek.ISR Documentation

Hi-C data from NHEK cell line - chromosome 22 at 500kb resolution

Description

An InteractionSet object 2508 interactions and 1 metadata column containing the Interaction Frequencies

Usage

nhek.IS

Format

An InteractionSet with 2508 rows and 1 metadata column:

IF

The Interaction Frequency - number of read counts found for the interaction between region1 and region2

Value

A matrix

Source

Data from the Aiden Lab. See their website at https://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525


dozmorovlab/HiCcompare documentation built on June 30, 2023, 3:09 a.m.