NHEK.chr22: Hi-C data from NHEK cell line - chromosome 22 at 500kb...
In dozmorovlab/HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
NHEK.chr22 R Documentation
Hi-C data from NHEK cell line - chromosome 22 at 500kb resolution
Description
A sparse upper triangular matrix containing the interacting regions and
the corresponding Interaction Frequency (IF).
Usage
NHEK.chr22
Format
A matrix with 2508 rows and 3 columns:
- region1
The first interacting region - corresponds to the
row name of a full Hi-C contact matrix
- region2
The second interacting region - corresponds to the
column name of a full Hi-C contact matrix
- IF
The Interaction Frequency - number of read counts found
for the interaction between region1 and region2
Value
A matrix
Source
Data from the Aiden Lab. See their website at
https://www.aidenlab.org/
Or the the GEO link to download the data
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525
dozmorovlab/HiCcompare documentation built on June 30, 2023, 3:09 a.m.
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| NHEK.chr22 | R Documentation |
Hi-C data from NHEK cell line - chromosome 22 at 500kb resolution
Description
A sparse upper triangular matrix containing the interacting regions and the corresponding Interaction Frequency (IF).
Usage
NHEK.chr22
Format
A matrix with 2508 rows and 3 columns:
- region1
The first interacting region - corresponds to the row name of a full Hi-C contact matrix
- region2
The second interacting region - corresponds to the column name of a full Hi-C contact matrix
- IF
The Interaction Frequency - number of read counts found for the interaction between region1 and region2
Value
A matrix
Source
Data from the Aiden Lab. See their website at https://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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