HiCcompare-package: HiCcompare

In dozmorovlab/HiCcompare: HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets

HiCcompare

Description

HiCcompare provides functions for joint normalization and difference detection in multiple Hi-C datasets. HiCcompare operates on processed Hi-C data in the form of chromosome-specific chromatin interaction matrices. It accepts three-column tab-separated text files storing chromatin interaction matrices in a sparse matrix format which are available from several sources. HiCcompare is designed to give the user the ability to perform a comparative analysis on the 3-Dimensional structure of the genomes of cells in different biological states.

Details

To learn more about HiCcompare, start with the vignettes: 'browseVignettes(package = "HiCcompare")'

See Also

Useful links:

• https://github.com/dozmorovlab/HiCcompare

• Report bugs at https://github.com/dozmorovlab/HiCcompare/issues

dozmorovlab/HiCcompare documentation built on June 30, 2023, 3:09 a.m.