MA_norm | R Documentation |
Perform MA normalization on a hic.table object
MA_norm( hic.table, degree = 2, Plot = FALSE, span = NA, loess.criterion = "gcv" )
hic.table |
A hic.table object |
degree |
The degree for loess normalization |
Plot |
logical, should the MA plot be output? |
span |
The span for loess. If left as the default value of NA the span will be calculated automatically |
loess.criterion |
The criterion for calculating the span for loess |
Performs loess normalization on the MA plot of the data.
An extended hic.table with adjusted IFs and M columns.
# create hic.table data("HMEC.chr22") data("NHEK.chr22") hic.table <- create.hic.table(HMEC.chr22, NHEK.chr22, chr= 'chr22') # Plug hic.table into MA_norm() MA_norm(hic.table)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.