Combine.Multiple.10X.Datasets: Helper function to combine multiple 10X datasets

In dviraran/SingleR: Reference-based single-cell RNA-seq annotation

Description

Helper function to combine multiple 10X datasets

Usage

Combine.Multiple.10X.Datasets(dirs, random.sample = 0, min.genes = 500)

Arguments

dirs	a list of the directories of the 10X samples. dirs should be the absolute path. dirs = list.dirs(dir.path,full.names = T)
random.sample	number of cells to choose randomly from each sample
min.genes	a threshold on the number of non-zero genes.

Value

a list with sc.data - the count matrix, and orig.ident - the directory name of the sample

dviraran/SingleR documentation built on April 21, 2020, 3:23 p.m.