SingleR.Cluster: SingleR.Cluster - using the scores data to cluster single...

In dviraran/SingleR: Reference-based single-cell RNA-seq annotation

Description

SingleR.Cluster - using the scores data to cluster single cells.

Usage

SingleR.Cluster(SingleR, num.clusts = 10, normalize_rows = F,
  normalize_cols = T)

Arguments

SingleR	the output from the SingleR function
num.clusts	number of clusters to output
normalize_rows	if TRUE the rows of the SingleR score matrix (single-cells) are scaled. Default is TRUE.
normalize_cols	if TRUE the columns of the SingleR score matrix (cell types) are scaled. Default is FALSE.

Value

cluster id for each single cell

dviraran/SingleR documentation built on April 21, 2020, 3:23 p.m.