blueprint_encode: Blueprint+Encode reference dataset for human

Description Usage Format

Description

Blueprint+Encode reference dataset for human

Usage

1

Format

A list with the following items:

data

Gene expression data matrix

types

vector of annotation per column in the matrix

main_types

vector of broad annotations per column in the matrix

name

name if the reference set

sd.thres

threshold of the standard deviation for genes to use in SingleR

de.genes.main

list of lists of differentially expressed genes between every two cell types in main_types

de.genes

list of lists of differentially expressed genes between every two cell types in types


dviraran/SingleR documentation built on April 21, 2020, 3:23 p.m.