SingleR.DrawHeatmap: Plot a heatmap of the scores for all the single cells

Description Usage Arguments

View source: R/SingleR.Plotting.R

Description

Plot a heatmap of the scores for all the single cells

Usage

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SingleR.DrawHeatmap(SingleR, cells.use = NULL, types.use = NULL,
  clusters = NULL, top.n = 40, normalize = T,
  order.by.clusters = F, cells_order = NULL, silent = F,
  fontsize_row = 9, ...)

Arguments

SingleR

the output from the SingleR function

cells.use

single cells to present, if NULL all single cells presented

types.use

cell types to present, if NULL all cell types presented

clusters

a clustering to present as annotation in the heatmap

top.n

number of cell types to presents. Default is 40. This can have an effect on the clustering which is performed only on the cell types presented.

normalize

if TRUE scores are normalized to a 0-1 scale.

order.by.clusters

if TRUE columns are ordered by the input clusters, and are not clustered again

cells_order

an input order for the column

silent

if TRUE do not draw the plot


dviraran/SingleR documentation built on April 21, 2020, 3:23 p.m.