View source: R/SingleR.Plotting.R
Plot a heatmap of the scores for all the single cells
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SingleR |
the output from the SingleR function |
cells.use |
single cells to present, if NULL all single cells presented |
types.use |
cell types to present, if NULL all cell types presented |
clusters |
a clustering to present as annotation in the heatmap |
top.n |
number of cell types to presents. Default is 40. This can have an effect on the clustering which is performed only on the cell types presented. |
normalize |
if TRUE scores are normalized to a 0-1 scale. |
order.by.clusters |
if TRUE columns are ordered by the input clusters, and are not clustered again |
cells_order |
an input order for the column |
silent |
if TRUE do not draw the plot |
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