SingleR.DrawBoxPlot: Plot boxplots for each label for a given single cell.

In dviraran/SingleR: Reference-based single-cell RNA-seq annotation

Description

Plot boxplots for each label for a given single cell.

Usage

SingleR.DrawBoxPlot(sc_data, cell_id, ref, labels.use = NULL,
  quantile.order = 0.8, main_types = F, top.n = 50, tit = NULL,
  colors = singler.colors)

Arguments

sc_data	the single-cell RNA-seq data set as a matrix with genes as rownames.
cell_id	a number of the single cell to use
ref	the reference dataset with genes as rownames. Gene names must be in the same format as the single cell data (if sc_data uses genes symbols, ref_data must have the same)
labels.use	a list of labels to use. If NULL uses all labels.
quantile.order	same a quantile.use - by which percentile to order the boxplots.
main_types	aggregate labels by main types or by all types
top.n	number of boxplots to present (starting from top)
tit	title for the boxplot
colors	colors to use. Default is singler.colors

Value

a list with a ggplot and the scores for the single cell

dviraran/SingleR documentation built on April 21, 2020, 3:23 p.m.