CreateVariableGeneSet: Create a list for differential genes for all pairwise cell...
In dviraran/SingleR: Reference-based single-cell RNA-seq annotation
Description
Usage
Arguments
Value
View source: R/SingleR.Create.R
Description
Create a list for differential genes for all pairwise cell types in the a reference data set.
Using this significantly reduces computation time for the 'de' variable gene method.
Usage
1
CreateVariableGeneSet(ref_data, types, n)
Arguments
ref_data
the reference dataset gene expression matrix
types
labels for each column in ref_data
n
number of genes per pairwise comparison
Value
list of lists. Each list contains a list for each cell types with n differential genes.
dviraran/SingleR documentation built on April 21, 2020, 3:23 p.m.
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Description Usage Arguments Value
View source: R/SingleR.Create.R
Description
Create a list for differential genes for all pairwise cell types in the a reference data set. Using this significantly reduces computation time for the 'de' variable gene method.
Usage
1 | CreateVariableGeneSet(ref_data, types, n)
|
Arguments
ref_data |
the reference dataset gene expression matrix |
types |
labels for each column in ref_data |
n |
number of genes per pairwise comparison |
Value
list of lists. Each list contains a list for each cell types with n differential genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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