hpca: Human Primary Cell Atlas (HPCA) reference dataset for human

In dviraran/SingleR: Reference-based single-cell RNA-seq annotation

Description

Human Primary Cell Atlas (HPCA) reference dataset for human

Usage

hpca

Format

A list with the following items:

data

Gene expression data matrix

types

vector of annotation per column in the matrix

main_types

vector of broad annotations per column in the matrix

name

name if the reference set

sd.thres

threshold of the standard deviation for genes to use in SingleR

de.genes.main

list of lists of differentially expressed genes between every two cell types in main_types

de.genes

list of lists of differentially expressed genes between every two cell types in types

dviraran/SingleR documentation built on April 21, 2020, 3:23 p.m.