SingleR.CreateObject: Wrapper function to create a SingleR object
In dviraran/SingleR: Reference-based single-cell RNA-seq annotation

Wrapper function to create a SingleR object

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SingleR.CreateObject(sc.data, ref, clusters = NULL, species = "Human",
  citation = "-", technology = "-", variable.genes = "de",
  fine.tune = T, do.main.types = T, numCores = SingleR.numCores)

`sc.data`	a matrix of single cell expression data
`ref`	a reference set object. This object must be a list containing: data - log2 normalized expression data; types - annotations for each of the samples; main_types - annotations for each of the samples, but less detailed; name - name for the reference set; sd.thres - a threshold for sd (used in 'sd' mode); de.genes - lists of lists of differentially expressed genes. Can be created using the CreateVariableGeneSet function. de.genes.main - lists of lists of differentially expressed genes. Can be created using the CreateVariableGeneSet function.
`clusters`	a numeric vector of cluster ids for each single cell. If NULL uses SingleR clustering.
`species`	The species of the sample ('Human' or 'Mouse').
`citation`	a citation for the project.
`technology`	The technology used for creating the single-cell data.
`variable.genes`	variable gene method to use - 'sd' or 'de'. Default is 'de'.
`fine.tune`	perform fine tuning. Default is TRUE. Fine-tuning may take long to run.
`do.main.types`	if TRUE runs a main cell type annotation using the main_types annotation.
`numCores`	Number of cores to use.