API for eilslabs/epic
Integrative Analysis and Visualization of Epigenomic Sequencing Data
| Global functions | |
|---|---|
| annotate_to_gene_models | Man page |
| annotate_to_genomic_features | Man page |
| available_gencode_fields | Man page |
| basic_genomic_regions_stat | Man page |
| binary_search | Man page |
| bp | Man page |
| chipseq_hooks | Man page |
| chromatin_states_transition_chord_diagram | Man page |
| common_regions | Man page |
| cor_columns | Man page |
| correlated_regions | Man page |
| cr_add_subtype_specificity | Man page |
| cr_enriched_at_tss | Man page |
| cr_gviz | Man page |
| cr_hilbert | Man page |
| cr_overlap_to_genomic_features | Man page |
| cr_scatterplot_me | Man page |
| enriched_heatmap_list_on_gene | Man page |
| enriched_heatmap_list_on_genomic_features | Man page |
| enriched_heatmap_list_on_tss_cgi | Man page |
| epic | Man page |
| extract_field_from_gencode | Man page |
| extract_sites | Man page |
| filter_correlated_regions | Man page |
| find_neighbours | Man page |
| genomic_corr_absdist | Man page |
| genomic_corr_jaccard | Man page |
| genomic_corr_nintersect | Man page |
| genomic_corr_pintersect | Man page |
| genomic_corr_reldist | Man page |
| genomic_corr_sintersect | Man page |
| genomic_regions_correlation | Man page |
| get_mean_methylation_in_genomic_features | Man page |
| get_peak_list | Man page |
| global_methylation_distribution | Man page |
| heatmap_diff_methylation_in_genomic_features | Man page |
| kb | Man page |
| load_config | Man page |
| logical_segment | Man page |
| make_transition_matrix_from_chromHMM | Man page |
| mb | Man page |
| methylation_hooks | Man page |
| methylation_subtype_classfication | Man page |
| percentOverlaps | Man page |
| plot_coverage_and_methylation_on_genome | Man page |
| plot_multiple_samples_methylation_on_genome | Man page |
| plot_subgroup_specificity_heatmap | Man page |
| print.bp | Man page |
| reduce2 | Man page |
| reduce_cr | Man page |
| reduce_cr_gap_test | Man page |
| run_pipeline | Man page |
| scatterplot_with_boxplot | Man page |
| set_counter | Man page |
| subgroup_specific_genomic_regions | Man page |
| systemdf | Man page |
| wgbs_qcplot | Man page |
