compare_go_searches: Compare the results from different ontology tools

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Compare the results from different ontology tools

Description

Combine the results from goseq, cluster profiler, topgo, and gostats; poke at them with a stick and see what happens. The general idea is to pull the p-value data from each tool and contrast that to the set of all possibile ontologies. This allows one to do a correlation coefficient between them. In addition, take the 1-pvalue for each ontology for each tool. Thus for strong p-values the score will be near 1 and so we can sum the scores for all the tools. Since topgo has 4 tools, the total possible is 7 if everything has a p-value equal to 0.

Usage

compare_go_searches(goseq = NULL, cluster = NULL, topgo = NULL, gostats = NULL)

Arguments

goseq	Result from simple_goseq()
cluster	Result from simple_clusterprofiler()
topgo	Result from topGO
gostats	Result from GOstats

Value

Summary of the similarities of ontology searches

See Also

[goseq] [clusterProfiler] [topGO] [goStats]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.