compare_significant_contrasts: Implement a cleaner version of 'subset_significants' from...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Implement a cleaner version of 'subset_significants' from analyses with Maria Adelaida.

Description

This should provide nice venn diagrams and some statistics to compare 2 or 3 contrasts in a differential expression analysis.

Usage

compare_significant_contrasts(
  sig_tables,
  second_sig_tables = NULL,
  compare_by = "deseq",
  weights = FALSE,
  contrasts = c(1, 2, 3)
)

Arguments

sig_tables	Set of significance tables to poke at.
second_sig_tables	Separate set of significant results, intra vs. inter comparisons.
compare_by	Use which program for the comparisons?
weights	When printing venn diagrams, weight them?
contrasts	List of contrasts to compare.

Value

List containing the intersections of the contrasts and plots describing them.

See Also

[Vennerable]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.