count_clonotype_by_cluster: Add a df of clonotype observations by cell cluster to @misc...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
count_clonotype_by_cluster R Documentation
Add a df of clonotype observations by cell cluster to @misc of a
Seurat datastructure.
Description
This seeks to count up and provide a couple of metric of how many
B/T cells are in each cluster of a VDJ single cell dataset.
Usage
count_clonotype_by_cluster(
scd,
column = "res0p2_clusters",
clono_column = "raw_clonotype_id",
add_sum = TRUE
)
Arguments
scd
Seurat single cell datastructure.
column
Cluster column in the metadata.
clono_column
Column containing VDJ annotations.
add_sum
Add sums of the clusters to the metadata?
Value
The scd with some new metadata.
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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| count_clonotype_by_cluster | R Documentation |
Add a df of clonotype observations by cell cluster to @misc of a Seurat datastructure.
Description
This seeks to count up and provide a couple of metric of how many B/T cells are in each cluster of a VDJ single cell dataset.
Usage
count_clonotype_by_cluster(
scd,
column = "res0p2_clusters",
clono_column = "raw_clonotype_id",
add_sum = TRUE
)
Arguments
scd |
Seurat single cell datastructure. |
column |
Cluster column in the metadata. |
clono_column |
Column containing VDJ annotations. |
add_sum |
Add sums of the clusters to the metadata? |
Value
The scd with some new metadata.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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